Back to Autoimmune Diseases

Scientists at the Institute for Systems Biology (ISB) reveal how T cells "decide" their fate in fighting infections like COVID-19, paving the way for improved treatments for infections, cancer, and autoimmune diseases.

Jim Heath with Jingyi Xie in a conference room

Scientists at the Institute for Systems Biology (ISB) have uncovered key insights into how T cells – the body’s frontline immune soldiers – respond to infections like COVID-19. Their research suggests that the disease-fighting functions of T cells are strongly influenced by the genetic sequence of the T cell receptors and the genetic sequence of the pathogen targets that trigger their activation. While variations in immune responses indicate some unpredictability, this discovery enhances our understanding of immune cell behavior, offering new possibilities for improving treatments and vaccine strategies. 

To make this breakthrough, ISB researchers developed APMAT, a powerful tool that integrates computational analysis with lab experiments to process large datasets and detect patterns in T-cell behavior. By analyzing COVID-19 patients, researchers developed insights for predicting how specific T cells would respond to specific viral targets, including predicting which T cells would evolve over time or provide long-term immunity, and which ones would disappear as the infection resolves.

“For decades, scientists have debated whether immune responses are random or follow set rules,” said Dr. Jingyi Xie, lead author of the study. “Our findings show that T cells follow a predictable pattern based on their genetically encoded molecular interactions.”

These findings could help scientists refine immune response strategies to improve long-term protection against diseases. Furthermore, these insights could contribute to more precise treatments for cancer and autoimmune diseases.

“If we can predict how a T cell will behave, we can create better treatments that train the immune system to work more effectively,” said ISB President and Professor Dr. Jim Heath, senior author of the study. “This research provides valuable insights into how immune responses can be better engineered for disease prevention and treatment.”

T cell "playing cards"
By understanding the rules and behaviors of T cells, we can start to imagine their attributes and personalities – like players in a card game. Image credit: Allison Kudla/ISB.

The ISB team plans to expand their research to see if these patterns apply to other diseases and different populations. Their goal is to apply these insights toward more personalized and effective immune-based therapies.

“Understanding the fundamental rules of T cell activation could be a game-changer for immunology,” Heath said.

The study was published in Nature Communications and is available here. For media inquiries or to speak with the authors, please contact ISB’s Media Desk at communications@isbscience.org.