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2025
2323737
2RQKSFR5
2025
1
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319
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Camacho, Oscar J. M., Kerry A. Ramsbottom, Ananth Prakash, Zhi Sun, Yasset Perez Riverol, Emily Bowler-Barnett, Maria Martin, et al. 2024. “Phosphorylation in the Plasmodium Falciparum Proteome: A Meta-Analysis of Publicly Available Data Sets.” Journal of Proteome Research 23 (12): 5326–41. https://doi.org/10.1021/acs.jproteome.4c00418. Cite
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Chang, Shu-Ching, Gary L. Grunkemeier, Jason D. Goldman, Mansen Wang, Paul A. McKelvey, Jennifer Hadlock, Qi Wei, and George A. Diaz. 2024. “A Simplified Pneumonia Severity Index (PSI) for Clinical Outcome Prediction in COVID-19.” PloS One 19 (5): e0303899. https://doi.org/10.1371/journal.pone.0303899. Cite Download
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Chen, Xinyi, Yapeng Su, Chloe Dai, Jason D. Goldman, James R. Heath, Si Liu, and Wei Sun. 2024. “Association between COVID-19 Disease Severity and T Cell Receptor Repertoire.” bioRxiv. https://doi.org/10.1101/2024.11.26.625333. Cite Download
Cyriaque, Valentine, Rodrigo Ibarra-Chávez, Anna Kuchina, Georg Seelig, Joseph Nesme, and Jonas Stenløkke Madsen. 2024. “Single-Cell RNA Sequencing Reveals Plasmid Constrains Bacterial Population Heterogeneity and Identifies a Non-Conjugating Subpopulation.” Nature Communications 15 (1): 5853. https://doi.org/10.1038/s41467-024-49793-x. Cite
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Eklund, Jen, Kelsie Fowler, Caroline Kiehle, Lori Henrickson, and Deb L. Morrison. 2024. “Make Climate Learning Happen Exactly Where You Are.” Connected Science Learning 0 (0): 1–7. https://doi.org/10.1080/24758779.2024.2371759. Cite
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Ellrott, Kyle, Chris K. Wong, Christina Yau, Mauro A. Castro, Jordan Lee, Brian Karlberg, Jasleen K. Grewal, et al. 2024. “Abstract 6548: Leveraging Compact Feature Sets for TCGA-Based Molecular Subtype Classification on New Samples.” Cancer Research 84 (6_Supplement): 6548. https://doi.org/10.1158/1538-7445.AM2024-6548. Cite
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Flores-Valdez, Mario Alberto, Eliza J. R. Peterson, Michel de Jesús Aceves-Sánchez, Nitin S. Baliga, Yasu S. Morita, Ian L. Sparks, Deepak Kumar Saini, et al. 2024. “Comparison of the Transcriptome, Lipidome, and c-Di-GMP Production between BCGΔBCG1419c and BCG, with Mincle- and Myd88-Dependent Induction of Proinflammatory Cytokines in Murine Macrophages.” Scientific Reports 14 (1): 11898. https://doi.org/10.1038/s41598-024-61815-8. Cite Download
Flower, Cameron T., Chunmei Liu, Hui-Yu Chuang, Xiaoyang Ye, Hanjun Cheng, James R. Heath, Wei Wei, and Forest M. White. 2024. “Signaling and Transcriptional Dynamics Underlying Early Adaptation to Oncogenic BRAF Inhibition.” BioRxiv, 2024–02. https://www.biorxiv.org/content/10.1101/2024.02.19.581004.abstract. Cite Download
Funk, Cory C., Martin Darvas, Christine Johnston, Max Robinson, Caitlyn Schaffer, Christian Battaglia, Martine Aubert, and Jesse C. Wiley. 2024. “Basic Science and Pathogenesis.” Alzheimer’s & Dementia: The Journal of the Alzheimer’s Association 20 Suppl 1:e093497. https://doi.org/10.1002/alz.093497. Cite
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Gomez-Artiguez, Leticia, Samuel de la Cámara-Fuentes, Zhi Sun, María Luisa Hernáez, Ana Borrajo, Aída Pitarch, Gloria Molero, et al. 2024. “Candida Albicans a Comprehensive View of the Proteome.” bioRxiv. https://doi.org/10.1101/2024.12.20.629377. Cite Download
Gordon, Ora, Isabelle Lucas Beckett, Kate Emery, Josiah Wagner, Kathleen Jade, Benjamin Cosgrove, John Welle, et al. 2024. “The Genomic Medicine for Everyone (Geno4ME) Study: Implementation of Whole Genome Sequencing for Population Screening in a Large Healthcare System.” Research Square. https://doi.org/10.21203/rs.3.rs-4888286/v1. Cite Download
Griffin, Patrick T., Alice Kane, Alexandre Trapp, Jien Li, Matthew Arnold, Jesse R. Poganik, Ryan J. Conway, et al. 2024. “TIME-Seq Reduces Time and Cost of DNA Methylation Measurement for Epigenetic Clock Construction.” Nature Aging. https://doi.org/10.1038/s43587-023-00555-2. Cite
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He, Fuchu, Ruedi Aebersold, Mark S. Baker, Xiuwu Bian, Xiaochen Bo, Daniel W. Chan, Cheng Chang, et al. 2024. “π-HuB: The Proteomic Navigator of the Human Body.” Nature 636 (8042): 322–31. https://doi.org/10.1038/s41586-024-08280-5. Cite
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Huang, Qiongrong, Zhiyuan Hu, Qiwen Zheng, Xuemei Mao, Wenxi Lv, Fei Wu, Dapeng Fu, et al. 2024. “A Proactive Intervention Study in Metabolic Syndrome High-Risk Populations Using Phenome-Based Actionable P4 Medicine Strategy.” Phenomics (Cham, Switzerland) 4 (2): 91–108. https://doi.org/10.1007/s43657-023-00115-z. Cite
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Hwang, Yeon Mi, Samantha N. Piekos, Alison G. Paquette, Qi Wei, Nathan D. Price, Leroy Hood, and Jennifer J. Hadlock. 2024. “Accelerating Adverse Pregnancy Outcomes Research amidst Rising Medication Use: Parallel Retrospective Cohort Analyses for Signal Prioritization.” BMC Medicine 22 (1): 495. https://doi.org/10.1186/s12916-024-03717-0. Cite Download
Hwang, Yeon Mi, Samantha N. Piekos, Qi Wei, Nathan D. Price, Leroy Hood, and Jennifer J. Hadlock. 2024. “Detection of Drug Effect Signals Associated with Adverse Pregnancy Outcomes Using Propensity Score Matching at Scale.” medRxiv. https://doi.org/10.1101/2024.03.21.24304579. Cite Download
Hwang, Yeon Mi, Qi Wei, Samantha N. Piekos, Bhargav Vemuri, Sevda Molani, Philip Mease, Leroy Hood, and Jennifer Hadlock. 2024. “Maternal-Fetal Outcomes in Patients with Immune-Mediated Inflammatory Diseases, with Consideration of Comorbidities: A Retrospective Cohort Study in a Large U.S. Healthcare System.” EClinicalMedicine 68:102435. https://doi.org/10.1016/j.eclinm.2024.102435. Cite Download Download
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Aladdin, Azzam, Yanhua Yao, Ciyu Yang, Günther Kahlert, Marvi Ghani, Nikolett Király, Anita Boratkó, Karen Uray, Gunnar Dittmar, and Krisztina Tar. 2020. “The Proteasome Activators Blm10/PA200 Enhance the Proteasomal Degradation of N-Terminal Huntingtin.” Biomolecules 10 (11). https://doi.org/10.3390/biom10111581. Cite Download
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Doan, Phuong, Aliyu Musa, Akshaya Murugesan, Vili Sipilä, Nuno R. Candeias, Frank Emmert-Streib, Pekka Ruusuvuori, Kirsi Granberg, Olli Yli-Harja, and Meenakshisundaram Kandhavelu. 2020. “Glioblastoma Multiforme Stem Cell Cycle Arrest by Alkylaminophenol Through the Modulation of EGFR and CSC Signaling Pathways.” Cells 9 (3). https://doi.org/10.3390/cells9030681. Cite Download
Du, Jiajun, Yapeng Su, Chenxi Qian, Dan Yuan, Kun Miao, Dongkwan Lee, Alphonsus H. C. Ng, et al. 2020. “Raman-Guided Subcellular Pharmaco-Metabolomics for Metastatic Melanoma Cells.” Nature Communications 11 (1): 4830. https://doi.org/10.1038/s41467-020-18376-x. Cite Download
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Emmert-Streib, Frank, Olli Yli-Harja, and Matthias Dehmer. 2020. “Artificial Intelligence: A Clarification of Misconceptions, Myths and Desired Status.” Frontiers in Artificial Intelligence 3:524339. https://doi.org/10.3389/frai.2020.524339. Cite Download
Eng, Jimmy K., and Eric W. Deutsch. 2020. “Extending Comet for Global Amino Acid Variant and Post-Translational Modification Analysis Using the PSI Extended FASTA Format.” Proteomics, e1900362. https://doi.org/10.1002/pmic.201900362. Cite
Fishbein, Anna, Weicang Wang, Haixia Yang, Jun Yang, Victoria M. Hallisey, Jianjun Deng, Sanne M. L. Verheul, et al. 2020. “Resolution of Eicosanoid/Cytokine Storm Prevents Carcinogen and Inflammation-Initiated Hepatocellular Cancer Progression.” Proceedings of the National Academy of Sciences of the United States of America 117 (35): 21576–87. https://doi.org/10.1073/pnas.2007412117. Cite
Flores-Valdez, Mario Alberto, Michel de Jesús Aceves-Sánchez, Eliza J. R. Peterson, Nitin Baliga, Jorge Bravo-Madrigal, Miguel Ángel De la Cruz-Villegas, Miguel A. Ares, et al. 2020. “Transcriptional Portrait of M. Bovis BCG during Biofilm Production Shows Genes Differentially Expressed during Intercellular Aggregation and Substrate Attachment.” Scientific Reports 10 (1): 12578. https://doi.org/10.1038/s41598-020-69152-2. Cite Download
Flynn, Jullien M., Robert Hubley, Clément Goubert, Jeb Rosen, Andrew G. Clark, Cédric Feschotte, and Arian F. Smit. 2020. “RepeatModeler2 for Automated Genomic Discovery of Transposable Element Families.” Proceedings of the National Academy of Sciences of the United States of America. https://doi.org/10.1073/pnas.1921046117. Cite Download
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Ghai, Vikas, Shannon Fallen, David Baxter, Kelsey Scherler, Taek-Kyun Kim, Yong Zhou, James S. Meabon, et al. 2020. “Alterations in Plasma MicroRNA and Protein Levels in War Veterans with Chronic Mild Traumatic Brain Injury.” Journal of Neurotrauma. https://doi.org/10.1089/neu.2019.6826. Cite
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Gillespie, Mark A., Carmen G. Palii, Daniel Sanchez-Taltavull, Paul Shannon, William J. R. Longabaugh, Damien J. Downes, Karthi Sivaraman, et al. 2020. “Absolute Quantification of Transcription Factors Reveals Principles of Gene Regulation in Erythropoiesis.” Molecular Cell 78 (5): 960-974.e11. https://doi.org/10.1016/j.molcel.2020.03.031. Cite Download
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