Cory Funk, PhD

Senior Research Scientist

Hood-Price Lab

Cory Funk
Ma, Shuyi, Cory C. Funk, and Nathan D. Price. 2010. “Systems Approaches to Molecular Cancer Diagnostics.” Discovery Medicine 10 (55): 531–42. Cite
Craig, Theodore A., Yuji Zhang, Melissa S. McNulty, Sumit Middha, Hemamalini Ketha, Ravinder J. Singh, Andrew T. Magis, et al. 2012. “Research Resource: Whole Transcriptome RNA Sequencing Detects Multiple 1alpha,25-Dihydroxyvitamin D(3)-Sensitive Metabolic Pathways in Developing Zebrafish.” Molecular Endocrinology (Baltimore, Md.) 26 (9): 1630–42. Cite
Earls, John C., James A. Eddy, Cory C. Funk, Younhee Ko, Andrew T. Magis, and Nathan D. Price. 2013. “AUREA: An Open-Source Software System for Accurate and User-Friendly Identification of Relative Expression Molecular Signatures.” BMC Bioinformatics 14. Cite
Sung, Jaeyun, Pan-Jun Kim, Shuyi Ma, Cory C. Funk, Andrew T. Magis, Yuliang Wang, Leroy Hood, Donald Geman, and Nathan D. Price. 2013. “Multi-Study Integration of Brain Cancer Transcriptomes Reveals Organ-Level Molecular Signatures.” PLoS Computational Biology 9 (7). Cite
Wang, Chunjing, Cory C. Funk, James A. Eddy, and Nathan D. Price. 2013. “Transcriptional Analysis of Aggressiveness and Heterogeneity across Grades of Astrocytomas.” PloS One 8 (10). Cite
Craig, Theodore A., Yuji Zhang, Andrew T. Magis, Cory C. Funk, Nathan D. Price, Stephen C. Ekker, and Rajiv Kumar. 2014. “Detection of 1α,25-Dihydroxyvitamin D-Regulated MiRNAs in Zebrafish by Whole Transcriptome Sequencing.” Zebrafish 11 (3): 207–18. Cite
Sangar, Vineet, Cory C. Funk, Ulrike Kusebauch, D. Campbell, Robert L. Moritz, and Nathan D. Price. 2014. “Quantitative Proteomic Analysis Reveals Effects of Epidermal Growth Factor Receptor (EGFR) on Invasion-Promoting Proteins Secreted by Glioblastoma Cells.” Molecular & Cellular Proteomics: MCP 13 (10): 2618–31. Cite
Chakrabarty, Paramita, Andrew Li, Carolina Ceballos-Diaz, James A. Eddy, Cory C. Funk, Brenda Moore, Nadia DiNunno, et al. 2015. “IL-10 Alters Immunoproteostasis in APP Mice, Increasing Plaque Burden and Worsening Cognitive Behavior.” Neuron 85 (3): 519–33. Cite
Eddy, James A., Cory C. Funk, and Nathan D. Price. 2015. “Fostering Synergy between Cell Biology and Systems Biology.” Trends in Cell Biology, May. Cite
Pestal, K., C. C. Funk, J. M. Snyder, N. D. Price, P. M. Treuting, and D. B. Stetson. 2015. “Isoforms of RNA-Editing Enzyme ADAR1 Independently Control Nucleic Acid Sensor MDA5-Driven Autoimmunity and Multi-Organ Development.” Immunity 43 (November): 933–44. Cite
Allen, Mariet, Minerva M. Carrasquillo, Cory Funk, Benjamin D. Heavner, Fanggeng Zou, Curtis S. Younkin, Jeremy D. Burgess, et al. 2016. “Human Whole Genome Genotype and Transcriptome Data for Alzheimer’s and Other Neurodegenerative Diseases.” Scientific Data 3: 160089. Cite
Pollak, Julia, Karan G. Rai, Cory C. Funk, Sonali Arora, Eunjee Lee, Jun Zhu, Nathan D. Price, Patrick J. Paddison, Jan-Marino Ramirez, and Robert C. Rostomily. 2017. “Ion Channel Expression Patterns in Glioblastoma Stem Cells with Functional and Therapeutic Implications for Malignancy.” PloS One 12 (3): e0172884. Cite
Allen, Mariet, Xue Wang, Jeremy D. Burgess, Jens Watzlawik, Daniel J. Serie, Curtis S. Younkin, Thuy Nguyen, et al. 2017. “Conserved Brain Myelination Networks Are Altered in Alzheimer’s and Other Neurodegenerative Diseases.” Alzheimer’s & Dementia: The Journal of the Alzheimer’s Association. Cite
Ghosh, Dhimankrishna, Cory C. Funk, Juan Caballero, Nameeta Shah, Katherine Rouleau, John C. Earls, Liliana Soroceanu, et al. 2017. “A Cell-Surface Membrane Protein Signature for Glioblastoma.” Cell Systems 4 (5): 516-529.e7. Cite
Sims, Rebecca, Sven J. van der Lee, Adam C. Naj, Céline Bellenguez, Nandini Badarinarayan, Johanna Jakobsdottir, Brian W. Kunkle, et al. 2017. “Rare Coding Variants in PLCG2, ABI3, and TREM2 Implicate Microglial-Mediated Innate Immunity in Alzheimer’s Disease.” Nature Genetics. Cite
Readhead, Ben, Jean-Vianney Haure-Mirande, Cory C. Funk, Matthew A. Richards, Paul Shannon, Vahram Haroutunian, Mary Sano, et al. 2018. “Multiscale Analysis of Independent Alzheimer’s Cohorts Finds Disruption of Molecular, Genetic, and Clinical Networks by Human Herpesvirus.” Neuron. Cite
Mikheev, Andrei M., Svetlana A. Mikheeva, Liza J. Severs, Cory C. Funk, Lei Huang, José L. McFaline-Figueroa, Jeanette Schwensen, et al. 2018. “Targeting TWIST1 through Loss of Function Inhibits Tumorigenicity of Human Glioblastoma.” Molecular Oncology 12 (7): 1188–1202. Cite
Allen, Mariet, Xue Wang, Daniel J. Serie, Samantha L. Strickland, Jeremy D. Burgess, Shunsuke Koga, Curtis S. Younkin, et al. 2018. “Divergent Brain Gene Expression Patterns Associate with Distinct Cell-Specific Tau Neuropathology Traits in Progressive Supranuclear Palsy.” Acta Neuropathologica 136 (5): 709–27. Cite Download
Chakrabarty, Paramita, Andrew Li, Thomas B. Ladd, Michael R. Strickland, Emily J. Koller, Jeremy D. Burgess, Cory C. Funk, et al. 2018. “TLR5 Decoy Receptor as a Novel Anti-Amyloid Therapeutic for Alzheimer’s Disease.” The Journal of Experimental Medicine 215 (9): 2247–64. Cite
Madduri, Ravi, Kyle Chard, Mike D’Arcy, Segun C. Jung, Alexis Rodriguez, Dinanath Sulakhe, Eric Deutsch, et al. 2019. “Reproducible Big Data Science: A Case Study in Continuous FAIRness.” PloS One 14 (4): e0213013. Cite Download
Pearl, Jocelynn R., Carlo Colantuoni, Dani E. Bergey, Cory C. Funk, Paul Shannon, Bijoya Basu, Alex M. Casella, et al. 2019. “Genome-Scale Transcriptional Regulatory Network Models of Psychiatric and Neurodegenerative Disorders.” Cell Systems 8 (2): 122-135.e7. Cite
Baloni, Priyanka, Cory C. Funk, Jingwen Yan, James T. Yurkovich, Alexandra Kueider-Paisley, Kwangsik Nho, Almut Heinken, et al. 2019. “Identifying Differences in Bile Acid Pathways for Cholesterol Clearance in Alzheimer’s Disease Using Metabolic Networks of Human Brain Regions.” BioRxiv, 782987. Cite Download
Li, Hong-Dong, Cory C. Funk, and Nathan D. Price. 2020. “IREAD: A Tool for Intron Retention Detection from RNA-Seq Data.” BMC Genomics 21 (1): 128. Cite Download

PhD, Cell & Developmental Biology, University of Illinois Urbana-Champaign 2010.

Network modeling; Transcription Regulatory Networks (TRNs); Alzheimer’s Disease