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2026
2323737
2RQKSFR5
2026
1
chicago-author-date-16th-edition
50
creator
asc
1
1
319
https://isbscience.org/wp-content/plugins/zotpress/
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2025
2323737
2RQKSFR5
2025
1
chicago-author-date-16th-edition
50
creator
asc
1
1
319
https://isbscience.org/wp-content/plugins/zotpress/
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Donnelly, Callum G., Sichong Peng, Lance Pflieger, Jane Manfredi, Michele Coleman, Noa Rappaport, Nathan D. Price, and Carrie J. Finno. 2025. “Bile Acids Segregate Metabolic Syndrome in a Cohort of 100 Deeply Phenotyped Horses.” Communications Biology 8 (1): 1711. http://doi.org/10.1038/s42003-025-09111-7. Cite Download
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Ellrott, Kyle, Christopher K. Wong, Christina Yau, Mauro A. A. Castro, Jordan A. Lee, Brian J. Karlberg, Jasleen K. Grewal, et al. 2025. “Classification of Non-TCGA Cancer Samples to TCGA Molecular Subtypes Using Compact Feature Sets.” Cancer Cell. http://doi.org/10.1016/j.ccell.2024.12.002. Cite
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Fain, Mindy J., Benjamin D. Horne, Leora I. Horwitz, Tanayott Thaweethai, Meredith Greene, Mady Hornig, Ariela R. Orkaby, et al. 2025. “Age-Related Changes in the Clinical Picture of Long COVID.” Journal of the American Geriatrics Society n/a (n/a). http://doi.org/10.1111/jgs.70043. Cite
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Firsanov, Denis, Max Zacher, Xiao Tian, Todd L. Sformo, Yang Zhao, Gregory Tombline, J. Yuyang Lu, et al. 2025. “Evidence for Improved DNA Repair in the Long-Lived Bowhead Whale.” Nature 648 (8094): 717–25. http://doi.org/10.1038/s41586-025-09694-5. Cite Download
Flower, Cameron T., Chunmei Liu, Hui-Yu Chuang, Xiaoyang Ye, Hanjun Cheng, James R. Heath, Wei Wei, and Forest M. White. 2025. “Signaling and Transcriptional Dynamics Underlying Early Adaptation to Oncogenic BRAF Inhibition.” Cell Systems, 101239. http://doi.org/10.1016/j.cels.2025.101239. Cite
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Gao, Huanyao, Kate Jensen, Jarred Nesbitt, Mark Ostroot, Gregory A. Cary, Jesse Wiley, Sergey Trushin, et al. 2025. “Mitochondrial Complex I Deficiency Induces Alzheimer’s Disease-like Signatures That Are Reversible by Targeted Therapy.” Alzheimer’s & Dementia: The Journal of the Alzheimer’s Association 21 (8): e70519. http://doi.org/10.1002/alz.70519. Cite
Geng, Linda N., Kristine M. Erlandson, Mady Hornig, Rebecca Letts, Caitlin Selvaggi, Hassan Ashktorab, Ornina Atieh, et al. 2025. “2024 Update of the RECOVER-Adult Long COVID Research Index.” JAMA. http://doi.org/10.1001/jama.2024.24184. Cite
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Gomez-Artiguez, Leticia, Samuel de la Cámara-Fuentes, Zhi Sun, María Luisa Hernáez, Ana Borrajo, Aída Pitarch, Gloria Molero, et al. 2025. “Candida Albicans: A Comprehensive View of the Proteome.” Journal of Proteome Research 24 (4): 1636–48. http://doi.org/10.1021/acs.jproteome.4c01020. Cite Download
Grewal, Jasleen K., A. Gordon Robertson, Kyle Ellrott, Christopher K. Wong, Jordan A. Lee, Christina Yau, Bahar Tercan, et al. 2025. “Protocol for Obtaining Cancer Type and Subtype Predictions Using subSCOPE.” STAR Protocols 6 (2): 103705. http://doi.org/10.1016/j.xpro.2025.103705. Cite
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Gupta, Vishal K., Vijaya V. Vaishnavi, Mario L. Arrieta-Ortiz, Abhirami P.s., Jyothsna K.m., Sharumathi Jeyasankar, Varun Raghunathan, Nitin S. Baliga, and Rachit Agarwal. 2025. “3D Hydrogel Culture System Recapitulates Key Tuberculosis Phenotypes and Demonstrates Pyrazinamide Efficacy.” Advanced Healthcare Materials n/a (n/a): 2304299. http://doi.org/10.1002/adhm.202304299. Cite
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Huang, Sui, Ana M. Soto, and Carlos Sonnenschein. 2025. “The End of the Genetic Paradigm of Cancer.” PLOS Biology 23 (3): e3003052. http://doi.org/10.1371/journal.pbio.3003052. Cite Download
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Abdilleh, Kawther, Boris Aguilar, and George Acquaah-Mensah. 2024. “Clinical and Multiomic Features Differentiate Young Black and White Breast Cancer Cohorts Derived by Machine Learning Approaches.” Clinical Breast Cancer, S1526-8209(24)00321-5. http://doi.org/10.1016/j.clbc.2024.11.015. Cite
Akhade, Ajay, Gabriela Mosquera, Srushti Vyas, Mario Arrieta-Ortiz, Fabienne Chevance, Amardeep Kaur, Eliza Peterson, Nitin Baliga, Kelly Hughes, and Naeha Subramanian. 2024. “A Non-Canonical Role for Caspase-1 in Controlling Antimicrobial Resistance of Intracellular Salmonella.” The Journal of Immunology 212 (1_Supplement): 0182_4505. http://doi.org/10.4049/jimmunol.212.supp.0182.4505. Cite Download
Armstrong, Sujit Silas, Daniel G. Chen, Sunil Kumar, James R. Heath, Matthew Feinstein, John R. Greenland, Daniel R. Calabrese, Lewis L. Lanier, Klaus Ley, and Avishai Shemesh. 2024. “CITE-Seq Analysis Reveals Human Cytomegalovirus and Diabetes-Associated Adaptive NK Cell Alterations in Cardiovascular Disease.” bioRxiv, 2024–03. https://www.biorxiv.org/content/10.1101/2024.03.22.581997.abstract. Cite Download
Bartolomucci, Alessandro, Alice E. Kane, Lauren Gaydosh, Maria Razzoli, Brianah M. McCoy, Dan Ehninger, Brian H. Chen, Susan E. Howlett, and Noah Snyder-Mackler. 2024. “Animal Models Relevant for Geroscience: Current Trends and Future Perspectives in Biomarkers, and Measures of Biological Aging.” The Journals of Gerontology. Series A, Biological Sciences and Medical Sciences 79 (9): glae135. http://doi.org/10.1093/gerona/glae135. Cite
Baumgartner, Andrew, Sui Huang, Jennifer Hadlock, and Cory Funk. 2024. “Dimensional Reduction of Gradient-like Stochastic Systems with Multiplicative Noise via Fokker-Planck Diffusion Maps.” arXiv. http://doi.org/10.48550/arXiv.2401.03095. Cite Download
Baumgartner, Andrew, Max Robinson, Todd Golde, Suman Jaydev, Sui Huang, Jennifer Hadlock, and Cory Funk. 2024. “Fokker-Planck Diffusion Maps of Multiple Single Cell Microglial Transcriptomes Reveals Radial Differentiation into Substates Associated with Alzheimer’s Pathology.” bioRxiv: The Preprint Server for Biology, 2024.06.21.599924. http://doi.org/10.1101/2024.06.21.599924. Cite Download
Bronstein, Becky, Molly Griffiths, Claudia McLaughlin Ludwig, Deb L. Morrison, Heidi Smith, and Barbara Steffens. 2024. “Action and Engagement in Climate Science Learning Pedagogy.” Connected Science Learning, 1–3. http://doi.org/10.1080/24758779.2024.2376483. Cite
Byrne, Audrey, Christian Diener, Bryan P. Brown, Brandon S. Maust, Colin Feng, Berenice L. Alinde, Sean M. Gibbons, et al. 2024. “Neonates Exposed to HIV but Uninfected Exhibit an Altered Gut Microbiota and Inflammation Associated with Impaired Breast Milk Antibody Function.” Microbiome 12 (1): 261. http://doi.org/10.1186/s40168-024-01973-z. Cite Download
Camacho, Oscar J. M., Kerry A. Ramsbottom, Ananth Prakash, Zhi Sun, Yasset Perez Riverol, Emily Bowler-Barnett, Maria Martin, et al. 2024. “Phosphorylation in the Plasmodium Falciparum Proteome: A Meta-Analysis of Publicly Available Data Sets.” Journal of Proteome Research 23 (12): 5326–41. http://doi.org/10.1021/acs.jproteome.4c00418. Cite
Carr, Alex V., Anne E. Otwell, Kristopher A. Hunt, Yan Chen, James Wilson, José P. Faria, Filipe Liu, et al. 2024. “Emergence and Disruption of Cooperativity in a Denitrifying Microbial Community.” bioRxiv. http://doi.org/10.1101/2024.10.24.620115. Cite Download
Chang, Shu-Ching, Gary L. Grunkemeier, Jason D. Goldman, Mansen Wang, Paul A. McKelvey, Jennifer Hadlock, Qi Wei, and George A. Diaz. 2024. “A Simplified Pneumonia Severity Index (PSI) for Clinical Outcome Prediction in COVID-19.” PloS One 19 (5): e0303899. http://doi.org/10.1371/journal.pone.0303899. Cite Download
Chen, Daniel G., Jingyi Xie, Jongchan Choi, Rachel H. Ng, Rongyu Zhang, Sarah Li, Rick Edmark, et al. 2024. “Integrative Systems Biology Reveals NKG2A-Biased Immune Responses Correlate with Protection in Infectious Disease, Autoimmune Disease, and Cancer.” Cell Reports 43 (3). http://doi.org/10.1016/j.celrep.2024.113872. Cite Download
Chen, Xinyi, Yapeng Su, Chloe Dai, Jason D. Goldman, James R. Heath, Si Liu, and Wei Sun. 2024. “Association between COVID-19 Disease Severity and T Cell Receptor Repertoire.” bioRxiv. http://doi.org/10.1101/2024.11.26.625333. Cite Download
Cyriaque, Valentine, Rodrigo Ibarra-Chávez, Anna Kuchina, Georg Seelig, Joseph Nesme, and Jonas Stenløkke Madsen. 2024. “Single-Cell RNA Sequencing Reveals Plasmid Constrains Bacterial Population Heterogeneity and Identifies a Non-Conjugating Subpopulation.” Nature Communications 15 (1): 5853. http://doi.org/10.1038/s41467-024-49793-x. Cite
Deutsch, Eric W., Leron W. Kok, Jonathan M. Mudge, Jorge Ruiz-Orera, Ivo Fierro-Monti, Zhi Sun, Jennifer G. Abelin, et al. 2024. “High-Quality Peptide Evidence for Annotating Non-Canonical Open Reading Frames as Human Proteins.” bioRxiv: The Preprint Server for Biology, 2024.09.09.612016. http://doi.org/10.1101/2024.09.09.612016. Cite
Diener, Christian, and Sean M. Gibbons. 2024. “Metagenomic Estimation of Dietary Intake from Human Stool.” bioRxiv: The Preprint Server for Biology, 2024.02.02.578701. http://doi.org/10.1101/2024.02.02.578701. Cite Download
Dirvin, Brooke, Heeju Noh, Lorenzo Tomassoni, Danting Cao, Yizhuo Zhou, Xiangyi Ke, Jun Qian, et al. 2024. “Identification and Targeting of Regulators of SARS-CoV-2-Host Interactions in the Airway Epithelium.” bioRxiv: The Preprint Server for Biology, 2024.10.11.617898. http://doi.org/10.1101/2024.10.11.617898. Cite Download
Don, Janith, Andrew J. Schork, Gwênlyn Glusman, Noa Rappaport, Steve R. Cummings, David Duggan, Anish Raju, et al. 2024. “The Relationship between 11 Different Polygenic Longevity Scores, Parental Lifespan, and Disease Diagnosis in the UK Biobank.” GeroScience. http://doi.org/10.1007/s11357-024-01107-1. Cite Download
Eklund, Jen, Kelsie Fowler, Caroline Kiehle, Lori Henrickson, and Deb L. Morrison. 2024. “Make Climate Learning Happen Exactly Where You Are.” Connected Science Learning 0 (0): 1–7. http://doi.org/10.1080/24758779.2024.2371759. Cite
Ellis, Dylan, Kengo Watanabe, Tomasz Wilmanski, Michael S. Lustgarten, Andres V. Ardisson Korat, Gwênlyn Glusman, Jennifer J. Hadlock, et al. 2024. “APOE Genotype and Biological Age Impact Inter-Omic Associations Related to Bioenergetics.” bioRxiv. http://doi.org/10.1101/2024.10.17.618322. Cite Download
Ellrott, Kyle, Chris K. Wong, Christina Yau, Mauro A. Castro, Jordan Lee, Brian Karlberg, Jasleen K. Grewal, et al. 2024. “Abstract 6548: Leveraging Compact Feature Sets for TCGA-Based Molecular Subtype Classification on New Samples.” Cancer Research 84 (6_Supplement): 6548. http://doi.org/10.1158/1538-7445.AM2024-6548. Cite
Faust, Saul N., Richard Haynes, Christine E. Jones, Natalie Staplin, Elizabeth Whittaker, Thomas Jaki, Ed Juszczak, Enti Spata, Mandy Wan, and James R. Heath. 2024. “Immunomodulatory Therapy in Children with Paediatric Inflammatory Multisystem Syndrome Temporally Associated with SARS-CoV-2 (PIMS-TS, MIS-C; RECOVERY): A Randomised, Controlled, Open-Label, Platform Trial.” The Lancet Child & Adolescent Health 8 (3): 190–200. https://www.thelancet.com/journals/lanchi/article/PIIS2352-4642(23)00316-4/fulltext. Cite
Firsanov, Denis, Max Zacher, Xiao Tian, Todd L. Sformo, Yang Zhao, Greg Tombline, J. Yuyang Lu, et al. 2024. “DNA Repair and Anti-Cancer Mechanisms in the Long-Lived Bowhead Whale.” bioRxiv: The Preprint Server for Biology, 2023.05.07.539748. http://doi.org/10.1101/2023.05.07.539748. Cite Download
Flores-Valdez, Mario Alberto, Eliza J. R. Peterson, Michel de Jesús Aceves-Sánchez, Nitin S. Baliga, Yasu S. Morita, Ian L. Sparks, Deepak Kumar Saini, et al. 2024. “Comparison of the Transcriptome, Lipidome, and c-Di-GMP Production between BCGΔBCG1419c and BCG, with Mincle- and Myd88-Dependent Induction of Proinflammatory Cytokines in Murine Macrophages.” Scientific Reports 14 (1): 11898. http://doi.org/10.1038/s41598-024-61815-8. Cite Download
Flower, Cameron T., Chunmei Liu, Hui-Yu Chuang, Xiaoyang Ye, Hanjun Cheng, James R. Heath, Wei Wei, and Forest M. White. 2024. “Signaling and Transcriptional Dynamics Underlying Early Adaptation to Oncogenic BRAF Inhibition.” bioRxiv, 2024–02. https://www.biorxiv.org/content/10.1101/2024.02.19.581004.abstract. Cite Download
Funk, Cory C., Martin Darvas, Christine Johnston, Max Robinson, Caitlyn Schaffer, Christian Battaglia, Martine Aubert, and Jesse C. Wiley. 2024. “Basic Science and Pathogenesis.” Alzheimer’s & Dementia: The Journal of the Alzheimer’s Association 20 Suppl 1: e093497. http://doi.org/10.1002/alz.093497. Cite
Gaisser, Karl D., Sophie N. Skloss, Leandra M. Brettner, Luana Paleologu, Charles M. Roco, Alexander B. Rosenberg, Matthew Hirano, R. William DePaolo, Georg Seelig, and Anna Kuchina. 2024. “High-Throughput Single-Cell Transcriptomics of Bacteria Using Combinatorial Barcoding.” Nature Protocols. http://doi.org/10.1038/s41596-024-01007-w. Cite
Geyer, Philipp E., Daniel Hornburg, Maria Pernemalm, Stefanie M. Hauck, Krishnan K. Palaniappan, Vincent Albrecht, Laura F. Dagley, et al. 2024. “The Circulating Proteome─Technological Developments, Current Challenges, and Future Trends.” Journal of Proteome Research 23 (12): 5279–95. http://doi.org/10.1021/acs.jproteome.4c00586. Cite
Goetz, Skye L., Amy K. Glen, and Gwênlyn Glusman. 2024. “MicrobiomeKG: Bridging Microbiome Research and Host Health Through Knowledge Graphs.” bioRxiv: The Preprint Server for Biology, 2024.10.10.617697. http://doi.org/10.1101/2024.10.10.617697. Cite Download
Gomez-Artiguez, Leticia, Samuel de la Cámara-Fuentes, Zhi Sun, María Luisa Hernáez, Ana Borrajo, Aída Pitarch, Gloria Molero, et al. 2024. “Candida Albicans a Comprehensive View of the Proteome.” bioRxiv. http://doi.org/10.1101/2024.12.20.629377. Cite Download
Gordon, Ora, Isabelle Lucas Beckett, Kate Emery, Josiah Wagner, Kathleen Jade, Benjamin Cosgrove, John Welle, et al. 2024. “The Genomic Medicine for Everyone (Geno4ME) Study: Implementation of Whole Genome Sequencing for Population Screening in a Large Healthcare System.” Research Square. http://doi.org/10.21203/rs.3.rs-4888286/v1. Cite Download
Griffin, Patrick T., Alice Kane, Alexandre Trapp, Jien Li, Matthew Arnold, Jesse R. Poganik, Ryan J. Conway, et al. 2024. “TIME-Seq Reduces Time and Cost of DNA Methylation Measurement for Epigenetic Clock Construction.” Nature Aging. http://doi.org/10.1038/s43587-023-00555-2. Cite
Hariharan, Ramkumar, Leroy Hood, and Nathan D. Price. 2024. “A Data-Driven Approach to Improve Wellness and Reduce Recurrence in Cancer Survivors.” Frontiers in Oncology 14: 1397008. http://doi.org/10.3389/fonc.2024.1397008. Cite Download
He, Fuchu, Ruedi Aebersold, Mark S. Baker, Xiuwu Bian, Xiaochen Bo, Daniel W. Chan, Cheng Chang, et al. 2024. “π-HuB: The Proteomic Navigator of the Human Body.” Nature 636 (8042): 322–31. http://doi.org/10.1038/s41586-024-08280-5. Cite
Heath, James R. 2024. “Abstract SY41-02: Experimental Methods for High Throughput Discovery and Validation of Tumor Antigens.” Cancer Research 84 (7_Supplement): SY41-02. https://aacrjournals.org/cancerres/article/84/7_Supplement/SY41-02/742137. Cite
Herzog, Chiara M. S., Ludger J. E. Goeminne, Jesse R. Poganik, Nir Barzilai, Daniel W. Belsky, Joe Betts-LaCroix, Brian H. Chen, et al. 2024. “Challenges and Recommendations for the Translation of Biomarkers of Aging.” Nature Aging 4 (10): 1372–83. http://doi.org/10.1038/s43587-024-00683-3. Cite
Hood, Leroy, and Scott Penberthy. 2024. “‘We’re Doing It Wrong!’ Phenomics and Hyperscale AI for Health Care.” AI in Precision Oncology 1 (1): 14–15. http://doi.org/10.1089/aipo.2023.29001.lho. Cite
Hood, Leroy, and Nathan Price. 2024. “The Age of Scientific Wellness: Why the Future of Medicine Is Personalized, Predictive, Data-Rich, and in Your Hands.” http://journals.stfm.org/media/j4ilao5z/brbrehio0260docx-2024-01-09-22-55.pdf. Cite Download
Huang, Qiongrong, Zhiyuan Hu, Qiwen Zheng, Xuemei Mao, Wenxi Lv, Fei Wu, Dapeng Fu, et al. 2024. “A Proactive Intervention Study in Metabolic Syndrome High-Risk Populations Using Phenome-Based Actionable P4 Medicine Strategy.” Phenomics (Cham, Switzerland) 4 (2): 91–108. http://doi.org/10.1007/s43657-023-00115-z. Cite
Hunt, Kristopher A., Alex V. Carr, Anne E. Otwell, Jacob J. Valenzuela, Kathleen S. Walker, Emma R. Dixon, Lauren M. Lui, et al. 2024. “Contribution of Microorganisms with the Clade II Nitrous Oxide Reductase to Suppression of Surface Emissions of Nitrous Oxide.” Environmental Science & Technology 58 (16): 7056–65. http://doi.org/10.1021/acs.est.3c07972. Cite
Hwang, Yeon Mi, Ryan T. Roper, Samantha N. Piekos, Daniel A. Enquobahrie, Mary F. Hebert, Alison G. Paquette, Priyanka Baloni, Nathan D. Price, Leroy Hood, and Jennifer J. Hadlock. 2024. “Timing of Selective Serotonin Reuptake Inhibitor Use and Risk for Preterm Birth and Related Adverse Events: With a Consideration of the COVID-19 Pandemic Period.” The Journal of Maternal-Fetal & Neonatal Medicine 37 (1): 2313364. http://doi.org/10.1080/14767058.2024.2313364. Cite Download
Hwang, Yeon Mi, Samantha N. Piekos, Alison G. Paquette, Qi Wei, Nathan D. Price, Leroy Hood, and Jennifer J. Hadlock. 2024. “Accelerating Adverse Pregnancy Outcomes Research amidst Rising Medication Use: Parallel Retrospective Cohort Analyses for Signal Prioritization.” BMC Medicine 22 (1): 495. http://doi.org/10.1186/s12916-024-03717-0. Cite Download
Hwang, Yeon Mi, Samantha N. Piekos, Qi Wei, Nathan D. Price, Leroy Hood, and Jennifer J. Hadlock. 2024. “Detection of Drug Effect Signals Associated with Adverse Pregnancy Outcomes Using Propensity Score Matching at Scale.” medRxiv. http://doi.org/10.1101/2024.03.21.24304579. Cite Download
Hwang, Yeon Mi, Qi Wei, Samantha N. Piekos, Bhargav Vemuri, Sevda Molani, Philip Mease, Leroy Hood, and Jennifer Hadlock. 2024. “Maternal-Fetal Outcomes in Patients with Immune-Mediated Inflammatory Diseases, with Consideration of Comorbidities: A Retrospective Cohort Study in a Large U.S. Healthcare System.” EClinicalMedicine 68: 102435. http://doi.org/10.1016/j.eclinm.2024.102435. Cite Download Download
Jiang, Boyu, Nick Quinn-Bohmann, Christian Diener, Vignesh Bose Nathan, Yu Han-Hallett, Lavanya Reddivari, Sean M. Gibbons, and Priyanka Baloni. 2024. “Understanding Disease-Associated Metabolic Changes in Human Colon Epithelial Cells Using iColonEpithelium Metabolic Reconstruction.” bioRxiv. http://doi.org/10.1101/2024.10.22.619644. Cite Download
Johnson-Martínez, Johannes P., Christian Diener, Anne E. Levine, Tomasz Wilmanski, David L. Suskind, Alexandra Ralevski, Jennifer Hadlock, et al. 2024. “Aberrant Bowel Movement Frequencies Coincide with Increased Microbe-Derived Blood Metabolites Associated with Reduced Organ Function.” Cell Reports. Medicine 5 (7): 101646. http://doi.org/10.1016/j.xcrm.2024.101646. Cite
Kader, Tanjina, Jia-Ren Lin, Clemens B. Hug, Shannon Coy, Yu-An Chen, Ino de Bruijn, Natalie Shih, et al. 2024. “Multimodal Spatial Profiling Reveals Immune Suppression and Microenvironment Remodeling in Fallopian Tube Precursors to High-Grade Serous Ovarian Carcinoma.” Cancer Discovery. http://doi.org/10.1158/2159-8290.CD-24-1366. Cite
Kane, Alice. 2024. “TRANSLATIONAL BIOMARKERS FOR AGING AND FRAILTY: IMPORTANT SEX DIFFERENCES.” Innovation in Aging 8 (Suppl 1): 504. http://doi.org/10.1093/geroni/igae098.1645. Cite Download
Kane, Alice E., Karthikeyani Chellappa, Michael B. Schultz, Matthew Arnold, Jien Li, Joao Amorim, Christian Diener, et al. 2024. “Long-Term NMN Treatment Increases Lifespan and Healthspan in Mice in a Sex Dependent Manner.” bioRxiv. http://doi.org/10.1101/2024.06.21.599604. Cite Download
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Gilligan, Molly M., Allison Gartung, Megan L. Sulciner, Paul C. Norris, Vikas P. Sukhatme, Diane R. Bielenberg, Sui Huang, Mark W. Kieran, Charles N. Serhan, and Dipak Panigrahy. 2019. “Aspirin-Triggered Proresolving Mediators Stimulate Resolution in Cancer.” Proceedings of the National Academy of Sciences of the United States of America 116 (13): 6292–97. http://doi.org/10.1073/pnas.1804000116. Cite
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Davidson, E. H., D. R. McClay, and L. Hood. 2003. “Regulatory Gene Networks and the Properties of the Developmental Process.” Proc Natl Acad Sci U S A 100 (4): 1475–80. Cite
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Goo, Y. A., E. C. Yi, N. S. Baliga, W. A. Tao, M. Pan, R. Aebersold, D. R. Goodlett, L. Hood, and W. V. Ng. 2003. “Proteomic Analysis of an Extreme Halophilic Archaeon, Halobacterium Sp. NRC-1.” Mol Cell Proteomics 2 (8): 506–24. Cite
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Guina, T., M. Wu, S. I. Miller, S. O. Purvine, E. C. Yi, J. Eng, D. R. Goodlett, R. Aebersold, R. K. Ernst, and K. A. Lee. 2003. “Proteomic Analysis of Pseudomonas Aeruginosa Grown under Magnesium Limitation.” J Am Soc Mass Spectrom 14 (7): 742–51. Cite
Ha, S. A., J. Torabinejad, D. B. DeWald, M. R. Wenk, L. Lucast, P. De Camilli, R. A. Newitt, R. Aebersold, and S. F. Nothwehr. 2003. “The Synaptojanin-like Protein Inp53/Sjl3 Functions with Clathrin in a Yeast TGN-to-Endosome Pathway Distinct from the GGA Protein-Dependent Pathway.” Mol Biol Cell 14 (4): 1319–33. Cite
Haendeler, J., G. Yin, Y. Hojo, Y. Saito, M. Melaragno, C. Yan, V. K. Sharma, M. Heller, R. Aebersold, and B. C. Berk. 2003. “GIT1 Mediates Src-Dependent Activation of Phospholipase Cgamma by Angiotensin II and Epidermal Growth Factor.” J Biol Chem 278 (50): 49936–44. Cite
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Heath, James R., M. E. Phelps, and L. Hood. 2003. “NanoSystems Biology.” Mol Imaging Biol 5 (5): 312–25. Cite
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Hu, S., Z. Le, R. Newitt, R. Aebersold, J. R. Kraly, M. Jones, and N. J. Dovichi. 2003. “Identification of Proteins in Single-Cell Capillary Electrophoresis Fingerprints Based on Comigration with Standard Proteins.” Anal Chem 75 (14): 3502–5. Cite
Hubley, R. M., E. Zitzler, and J. Roach. 2003. “Evolutionary Algorithms for the Selection of Single Nucleotide Polymorphisms.” BMC Bioinformatics 4 (July): 30. Cite
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Lin, F., K. Cordes, L. Li, L. Hood, W. G. Couser, S. J. Shankland, and P. Igarashi. 2003. “Hematopoietic Stem Cells Contribute to the Regeneration of Renal Tubules after Renal Ischemia-Reperfusion Injury in Mice.” J Am Soc Nephrol 14 (5): 1188–99. Cite
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Gan, T. I., L. Rowen, R. Nesbitt, B. A. Roe, H. Wu, P. Hu, Z. Yao, U. J. Kim, T. O’Sickey, and M. Bina. 2002. “Genomic Organization of Human TCF12 Gene and Spliced mRNA Variants Producing Isoforms of Transcription Factor HTF4.” Cytogenet Genome Res 98 (4): 245–48. Cite
Gjertsen, B. T., A. M. Oyan, B. Marzolf, R. Hovland, G. Gausdal, S. O. Doskeland, K. Dimitrov, et al. 2002. “Analysis of Acute Myelogenous Leukemia: Preparation of Samples for Genomic and Proteomic Analyses.” J Hematother Stem Cell Res 11 (3): 469–81. Cite
Graham, J., W. A. Hagopian, I. Kockum, L. S. Li, C. B. Sanjeevi, R. M. Lowe, J. B. Schaefer, et al. 2002. “Genetic Effects on Age-Dependent Onset and Islet Cell Autoantibody Markers in Type 1 Diabetes.” Diabetes 51 (5): 1346–55. Cite
Griffin, T. J., S. P. Gygi, T. Ideker, B. Rist, J. Eng, L. Hood, and R. Aebersold. 2002. “Complementary Profiling of Gene Expression at the Transcriptome and Proteome Levels in Saccharomyces Cerevisiae.” Mol Cell Proteomics 1 (4): 323–33. Cite
Guo, Z., M. S. Gatterman, L. Hood, J. A. Hansen, and E. W. Petersdorf. 2002. “Oligonucleotide Arrays for High-Throughput SNPs Detection in the MHC Class I Genes: HLA-B as a Model System.” Genome Res 12 (3): 447–57. Cite
Gygi, S. P., B. Rist, T. J. Griffin, J. Eng, and R. Aebersold. 2002. “Proteome Analysis of Low-Abundance Proteins Using Multidimensional Chromatography and Isotope-Coded Affinity Tags.” J Proteome Res 1 (1): 47–54. Cite
Hamerman, J. A., F. Hayashi, L. A. Schroeder, S. P. Gygi, A. L. Haas, L. Hampson, P. Coughlin, R. Aebersold, and A. Aderem. 2002. “Serpin 2a Is Induced in Activated Macrophages and Conjugates to a Ubiquitin Homolog.” J Immunol 168 (5): 2415–23. Cite
Hawn, T. R., A. Ozinsky, D. M. Underhill, F. S. Buckner, S. Akira, and A. Aderem. 2002. “Leishmania Major Activates IL-1 Alpha Expression in Macrophages through a MyD88-Dependent Pathway.” Microbes Infect 4 (8): 763–71. Cite
Hood, L. 2002. “The InTouch Interview with Biotech Man Leroy Hood, MD, PhD. Interview by Peter Tarr.” InTouch 4 (3): 28–32. Cite
Hood, L. 2002. “A Personal View of Molecular Technology and How It Has Changed Biology.” J Proteome Res 1 (5): 399–409. Cite
James, E. A., S. P. Gygi, M. L. Adams, R. H. Pierce, N. Fausto, R. Aebersold, S. D. Nelson, and S. A. Bruschi. 2002. “Mitochondrial Aconitase Modification, Functional Inhibition, and Evidence for a Supramolecular Complex of the TCA Cycle by the Renal Toxicant S-(1,1,2,2-Tetrafluoroethyl)-L-Cysteine.” Biochemistry 41 (21): 6789–97. Cite
Kabak, S., B. J. Skaggs, M. R. Gold, M. Affolter, K. L. West, M. S. Foster, K. Siemasko, A. C. Chan, R. Aebersold, and M. R. Clark. 2002. “The Direct Recruitment of BLNK to Immunoglobulin Alpha Couples the B-Cell Antigen Receptor to Distal Signaling Pathways.” Mol Cell Biol 22 (8): 2524–35. Cite
Keller, A., S. Purvine, A. I. Nesvizhskii, S. Stolyar, D. R. Goodlett, and E. Kolker. 2002. “Experimental Protein Mixture for Validating Tandem Mass Spectral Analysis.” OMICS 6 (2): 207–12. Cite
Keller, A., A. I. Nesvizhskii, E. Kolker, and R. Aebersold. 2002. “Empirical Statistical Model to Estimate the Accuracy of Peptide Identifications Made by MS/MS and Database Search.” Anal Chem 74 (20): 5383–92. Cite
Kumanovics, A., A. Madan, S. Qin, L. Rowen, L. Hood, and K. Fischer Lindahl. 2002. “QUOD ERAT FACIENDUM: Sequence Analysis of the H2-D and H2-Q Regions of 129/SvJ Mice.” Immunogenetics 54 (7): 479–89. Cite
Lane, R. P., J. C. Roach, I. Lee, C. Boysen, A. Smit, B. J. Trask, and L. Hood. 2002. “Genomic Analysis of the Olfactory Receptor Region of the Mouse and Human T-Cell Receptor Alpha/Delta Loci.” Genome Research 12 (1): 81–87. Cite
Lane, R. P., T. Cutforth, R. Axel, L. Hood, and B. J. Trask. 2002. “Sequence Analysis of Mouse Vomeronasal Receptor Gene Clusters Reveals Common Promoter Motifs and a History of Recent Expansion.” Proc Natl Acad Sci U S A 99 (1): 291–96. Cite
Lee, H., T. J. Griffin, S. P. Gygi, B. Rist, and R. Aebersold. 2002. “Development of a Multiplexed Microcapillary Liquid Chromatography System for High-Throughput Proteome Analysis.” Anal Chem 74 (17): 4353–60. Cite
Leong, K. G., X. Hu, L. Li, M. Noseda, B. Larrivee, C. Hull, L. Hood, F. Wong, and A. Karsan. 2002. “Activated Notch4 Inhibits Angiogenesis: Role of Beta 1-Integrin Activation.” Mol Cell Biol 22 (8): 2830–41. Cite
Leslie, D. M., B. Grill, M. P. Rout, R. W. Wozniak, and J. D. Aitchison. 2002. “Kap121p-Mediated Nuclear Import Is Required for Mating and Cellular Differentiation in Yeast.” Mol Cell Biol 22 (8): 2544–55. Cite
Liu, A. Y., P. S. Nelson, G. van den Engh, and L. Hood. 2002. “Human Prostate Epithelial Cell-Type cDNA Libraries and Prostate Expression Patterns.” Prostate 50 (2): 92–103. Cite
Lusk, C. P., T. Makhnevych, M. Marelli, J. D. Aitchison, and R. W. Wozniak. 2002. “Karyopherins in Nuclear Pore Biogenesis: A Role for Kap121p in the Assembly of Nup53p into Nuclear Pore Complexes.” J Cell Biol 159 (2): 267–78. Cite
Marotti, Jr, R. Newitt, Y. Wang, R. Aebersold, and H. G. Dohlman. 2002. “Direct Identification of a G Protein Ubiquitination Site by Mass Spectrometry.” Biochemistry 41 (16): 5067–74. Cite
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Nelson, P. S., N. Clegg, H. Arnold, C. Ferguson, M. Bonham, J. White, L. Hood, and B. Lin. 2002. “The Program of Androgen-Responsive Genes in Neoplastic Prostate Epithelium.” Proc Natl Acad Sci U S A 99 (18): 11890–95. Cite
Papin, Jason A., Nathan D. Price, and Bernhard O. Palsson. 2002. “Extreme Pathway Lengths and Reaction Participation in Genome-Scale Metabolic Networks.” Genome Research 12 (12): 1889–1900. http://doi.org/10.1101/gr.327702. Cite
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Cameron, R. A., G. Mahairas, J. P. Rast, P. Martinez, T. R. Biondi, S. Swartzell, J. C. Wallace, et al. 2000. “A Sea Urchin Genome Project: Sequence Scan, Virtual Map, and Additional Resources.” Proc Natl Acad Sci U S A 97 (17): 9514–18. Cite
Chaudhary, P. M., M. T. Eby, A. Jasmin, A. Kumar, L. Liu, and L. Hood. 2000. “Activation of the NF-kappaB Pathway by Caspase 8 and Its Homologs.” Oncogene 19 (39): 4451–60. Cite
Deng, Y., A. Madan, A. B. Banta, C. Friedman, B. J. Trask, L. Hood, and L. Li. 2000. “Characterization, Chromosomal Localization, and the Complete 30-Kb DNA Sequence of the Human Jagged2 (JAG2) Gene.” Genomics 63 (1): 133–38. Cite
Ebrini, I., D. Agnello, I. Miller, P. Villa, M. Fratelli, P. Ghezzi, M. Gemeiner, J. Chan, R. Aebersold, and E. Gianazza. 2000. “Proteins of Rat Serum V: Adjuvant Arthritis and Its Modulation by Nonsteroidal Anti-Inflammatory Drugs.” Electrophoresis 21 (11): 2170–79. Cite
Gan, L., I. Lee, R. Smith, R. Argonza-Barrett, H. Lei, J. McCuaig, P. Moss, B. Paeper, and K. Wang. 2000. “Sequencing and Expression Analysis of the Serine Protease Gene Cluster Located in Chromosome 19q13 Region.” Gene 257 (1): 119–30. Cite
Gibbs, M., J. L. Stanford, G. P. Jarvik, M. Janer, M. Badzioch, M. A. Peters, E. L. Goode, et al. 2000. “A Genomic Scan of Families with Prostate Cancer Identifies Multiple Regions of Interest.” Am J Hum Genet 67 (1): 100–109. Cite
Gold, E. S., N. S. Morrissette, D. M. Underhill, J. Guo, M. Bassetti, and A. Aderem. 2000. “Amphiphysin IIm, a Novel Amphiphysin II Isoform, Is Required for Macrophage Phagocytosis.” Immunity 12 (3): 285–92. Cite
Goode, E. L., J. L. Stanford, L. Chakrabarti, M. Gibbs, S. Kolb, R. A. McIndoe, V. A. Buckley, et al. 2000. “Linkage Analysis of 150 High-Risk Prostate Cancer Families at 1q24-25.” Genet Epidemiol 18 (3): 251–75. Cite
Goodlett, D. R., J. E. Bruce, G. A. Anderson, B. Rist, L. Pasa-Tolic, O. Fiehn, R. D. Smith, and R. Aebersold. 2000. “Protein Identification with a Single Accurate Mass of a Cysteine-Containing Peptide and Constrained Database Searching.” Anal Chem 72 (6): 1112–18. Cite
Goodlett, D. R., R. Aebersold, and J. Watts. 2000. “Quantitative in Vitro Kinase Reaction as a Guide for Phosphoprotein Analysis by Mass Spectrometry.” Rapid Commun Mass Spectrom 14 (5): 344–48. Cite
Gregory, K. E., J. T. Oxford, Y. Chen, J. E. Gambee, S. P. Gygi, R. Aebersold, P. J. Neame, D. E. Mechling, H. P. Bachinger, and N. P. Morris. 2000. “Structural Organization of Distinct Domains within the Non-Collagenous N-Terminal Region of Collagen Type XI.” J Biol Chem 275 (15): 11498–506. Cite
Gygi, S. P., and R. Aebersold. 2000. “Using Mass Spectrometry for Quantitative Proteomics.” Trends in Biotechnology 18 (Supp. 1) (July): 31–36. Cite
Gygi, S. P., and R. Aebersold. 2000. “Mass Spectrometry and Proteomics.” Curr Opin Chem Biol 4 (5): 489–94. Cite
Gygi, S. P., B. Rist, and R. Aebersold. 2000. “Measuring Gene Expression by Quantitative Proteome Analysis.” Curr Opin Biotechnol 11 (4): 396–401. Cite
Gygi, S. P., G. L. Corthals, Y. Zhang, Y. Rochon, and R. Aebersold. 2000. “Evaluation of Two-Dimensional Gel Electrophoresis-Based Proteome Analysis Technology.” Proc Natl Acad Sci U S A 97 (17): 9390–95. Cite
Haynes, P. A., and R. Aebersold. 2000. “Simultaneous Detection and Identification of O-GlcNAc-Modified Glycoproteins Using Liquid Chromatography-Tandem Mass Spectrometry.” Anal Chem 72 (21): 5402–10. Cite
Heller, M., D. R. Goodlett, J. Watts, and R. Aebersold. 2000. “A Comprehensive Characterization of the T-Cell Antigen Receptor Complex Composition by Microcapillary Liquid Chromatography-Tandem Mass Spectrometry.” Electrophoresis 21 (11): 2180–95. Cite
Hood, L. 2000. “The Human Genome Project–Launch Pad for Human Genetic Engineering.” In Engineering the Human Germline (1st Edition), edited by J. Campbell, 17–24. New York: Oxford University Press. Cite
Ideker, T., V. Thorsson, A. F. Siegel, and L. E. Hood. 2000. “Testing for Differentially-Expressed Genes by Maximum-Likelihood Analysis of Microarray Data.” J Comput Biol 7 (6): 805–17. Cite
Ideker, T. E., V. Thorsson, and R. M. Karp. 2000. “Discovery of Regulatory Interactions through Perturbation: Inference and Experimental Design.” Pac Symp Biocomput, 305–16. Cite
Katze, M. G., B. Kwieciszewski, D. R. Goodlett, C. M. Blakely, P. Neddermann, S. L. Tan, and R. Aebersold. 2000. “Ser(2194) Is a Highly Conserved Major Phosphorylation Site of the Hepatitis C Virus Nonstructural Protein NS5A.” Virology 278 (2): 501–13. Cite
Liao, D. F., Z. G. Jin, A. S. Baas, G. Daum, S. P. Gygi, R. Aebersold, and B. C. Berk. 2000. “Purification and Identification of Secreted Oxidative Stress-Induced Factors from Vascular Smooth Muscle Cells.” J Biol Chem 275 (1): 189–96. Cite
Lin, B., J. T. White, C. Ferguson, R. Bumgarner, C. Friedman, B. Trask, W. Ellis, P. Lange, L. Hood, and P. S. Nelson. 2000. “PART-1: A Novel Human Prostate-Specific, Androgen-Regulated Gene That Maps to Chromosome 5q12.” Cancer Res 60 (4): 858–63. Cite
Livak, F., D. B. Burtrum, L. Rowen, D. G. Schatz, and H. T. Petrie. 2000. “Genetic Modulation of T Cell Receptor Gene Segment Usage during Somatic Recombination.” J Exp Med 192 (8): 1191–96. Cite
Mikheev, A. M., S. A. Mikheev, Y. Zhang, R. Aebersold, and H. Zarbl. 2000. “CArG Binding Factor A (CBF-A) Is Involved in Transcriptional Regulation of the Rat Ha-Ras Promoter.” Nucleic Acids Res 28 (19): 3762–70. Cite
Morrison, D. L., A. Yee, H. B. Paddon, D. Vilimek, R. Aebersold, and S. L. Pelech. 2000. “Regulation of the Meiosis-Inhibited Protein Kinase, a P38(MAPK) Isoform, during Meiosis and Following Fertilization of Seastar Oocytes.” J Biol Chem 275 (44): 34236–44. Cite
Nelson, P. S., N. Clegg, B. Eroglu, V. Hawkins, R. Bumgarner, T. Smith, and L. Hood. 2000. “The Prostate Expression Database (PEDB): Status and Enhancements in 2000.” Nucleic Acids Res 28 (1): 212–13. Cite
Nelson, P. S., D. Han, Y. Rochon, G. L. Corthals, B. Lin, A. Monson, V. Nguyen, et al. 2000. “Comprehensive Analyses of Prostate Gene Expression: Convergence of Expressed Sequence Tag Databases, Transcript Profiling and Proteomics.” Electrophoresis 21 (9): 1823–31. Cite
Ng, W. V., S. P. Kennedy, G. G. Mahairas, B. Berquist, M. Pan, H. D. Shukla, S. R. Lasky, et al. 2000. “Genome Sequence of Halobacterium Species NRC-1.” Proc Natl Acad Sci U S A 97 (22): 12176–81. Cite
Ostrowski, J., D. S. Schullery, O. N. Denisenko, Y. Higaki, J. Watts, R. Aebersold, L. Stempka, M. Gschwendt, and K. Bomsztyk. 2000. “Role of Tyrosine Phosphorylation in the Regulation of the Interaction of Heterogenous Nuclear Ribonucleoprotein K Protein with Its Protein and RNA Partners.” J Biol Chem 275 (5): 3619–28. Cite
Ozinsky, A., D. M. Underhill, J. D. Fontenot, A. M. Hajjar, K. D. Smith, C. B. Wilson, L. Schroeder, and A. Aderem. 2000. “The Repertoire for Pattern Recognition of Pathogens by the Innate Immune System Is Defined by Cooperation between Toll-like Receptors.” Proc Natl Acad Sci U S A 97 (25): 13766–71. Cite
Rampazzo, A., F. Pivotto, G. Occhi, N. Tiso, S. Bortoluzzi, L. Rowen, L. Hood, A. Nava, and G. A. Danieli. 2000. “Characterization of C14orf4, a Novel Intronless Human Gene Containing a Polyglutamine Repeat, Mapped to the ARVD1 Critical Region.” Biochem Biophys Res Commun 278 (3): 766–74. Cite
Raught, B., A. C. Gingras, S. P. Gygi, H. Imataka, S. Morino, A. Gradi, R. Aebersold, and N. Sonenberg. 2000. “Serum-Stimulated, Rapamycin-Sensitive Phosphorylation Sites in the Eukaryotic Translation Initiation Factor 4GI.” EMBO J 19 (3): 434–44. Cite
Roach, J., V. Thorsson, and A. F. Siegel. 2000. “Parking Strategies for Genome Sequencing.” Genome Res 10 (7): 1020–30. Cite
Rowen, L., G. K. Wong, R. P. Lane, and L. Hood. 2000. “Intellectual Property. Publication Rights in the Era of Open Data Release Policies.” Science 289 (5486): 1881. Cite
Siegel, A. F., G. van den Engh, L. Hood, B. Trask, and J. Roach. 2000. “Modeling the Feasibility of Whole Genome Shotgun Sequencing Using a Pairwise End Strategy.” Genomics 68 (3): 237–46. Cite
Timperman, A. T., and R. Aebersold. 2000. “Peptide Electroextraction for Direct Coupling of In-Gel Digests with Capillary LC-MS/MS for Protein Identification and Sequencing.” Anal Chem 72 (17): 4115–21. Cite
Yu, G., M. Nishimura, S. Arawaka, D. Levitan, L. Zhang, A. Tandon, Y. Q. Song, et al. 2000. “Nicastrin Modulates Presenilin-Mediated Notch/Glp-1 Signal Transduction and betaAPP Processing.” Nature 407 (6800): 48–54. Cite