ISB in collaboration with the NCI Cancer Systems Biology Consortium and MC2 Centers presents a free virtual workshop
Monday, February 12 from 8:30 - 3 PST
ISB is hosting a free one-day Spatial Multi-Omics for Cancer Systems Biology virtual workshop. This virtual workshop will consist of four sessions on topics including: experimental methods, computational algorithms, applications of spatial multi-omics and a practical methods tutorial. The workshop will include the use of Jupyter notebooks and GitHub software to teach computational spatial multi-omics data analysis. The intended audience is graduate students, postdocs, principal investigators, industry scientists, and educators.
Organized by the ST-Analytics Program within the NCI Cancer Systems Biology Consortium.
Session One: Experimental and Computational Methods I
Session Two: Experimental and Computational Methods II
Session Three: Applications of Spatial Multi-Omics
Session Four: Practical Methods in Spatial Omics
8:30 a.m. - 3 p.m. PST.
| Time | Talk | Info | Slides |
|---|---|---|---|
| 8:30 - 8:45 | Session One: Experimental and Computational Methods I Chair: Jim Heath, PhD Introduction and goals of the workshop |
Webinar via Zoom | Download Slides |
| 8:45 - 9:05 | Speaker: Rong Fan, PhD Sequencing-based spatial multi-omics mapping |
Webinar via Zoom | Download Slides |
| 9:05 - 9:25 | Speaker: Ruben Dries, PhD The GIOTTO software tools |
Webinar via Zoom | Download Slides |
| 9:25 - 9:45 | Speaker: Lu Wei, PhD Spatial metabolic imaging |
Webinar via Zoom | Download Slides |
| 9:45 - 10:00 | 15-minute Q&A All Speakers from Session One Moderated by Session Chair |
Webinar via Zoom | |
| 10:00 - 10:15 | Break | ||
| 10:15 - 10:30 | Session Two: Experimental and Computational Methods II Chair: Vésteinn Thorsson, PhD Introduction and relating spatial features across assay platforms |
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| 10:30 - 10:50 | Speaker: Robert Krueger, PhD Visual analytics for imaging-based spatial biology profiling |
Webinar via Zoom | Download Slides |
| 10:50 - 11:10 | Speaker: Joseph Beechem, PhD Spatial molecular imaging of FFPE cancer samples at any spatial-plex allows true systems biology understanding |
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| 11:10 - 11:30 | Speaker: Lyla Atta Evaluating normalization approaches for imaging-based spatial profiling technologies |
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| 11:30 - 11:45 | 15-minute Q&A All Speakers from Session Two Moderated by Session Chair |
Webinar via Zoom | |
| 11:45 - 12:00 | Break | ||
| 12:00 - 12:05 | Session Three: Applications of Spatial Multi-Omics Chair: Wei Wei, PhD Introduction to applications of spatial multiomics |
Webinar via Zoom | Download Slides |
| 12:05 - 12:25 | Speaker: Katie Campbell, PhD Applications of spatial multiomics tools |
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| 12:25 - 12:45 | Speaker: Sandro Santagata, MD, PhD Applications of spatial multiomics tools |
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| 12:45 - 13:00 | 15-minute Q&A All Speakers from Session Three Moderated by Session Chair |
Webinar via Zoom | |
| 13:00 - 13:15 | Break | ||
| 13:15 - 15:00 | Session Four: Practical Methods in Spatial Omics Chair: Rong Fan, PhD Rong Fan and members of his group from Yale University (Shuozhen Bao, Alev Baysoy, Zhiliang Bai) lead a practical tutorial with Jupyter notebooks and GitHub software, to teach ‘hands-on’ experimental methods and computational tools for spatial omics and data analysis. |
Webinar via Zoom | Download Slides
GitHub Link |
